CCUG


CCUG 46407 T Arthrobacter sanguinis
Statues of names: Mages,Frodl,Bernard and Funke 2009 ? - IN
NCBI  Euzeby   StrainInfo.net   Sequences  
ISOL:28 Mar 2002; Sweden,Stockholm
SOURCE:Human blood,63-yr-old male
DEP:S.Bernander,KS,Stockholm,Sweden 29 Apr 2002 <M.Rylander,Karolinska Hospital,Stockholm,Sweden
OCC:KS OS-00481/02;DSM 21259 911*286/02;961*080/02;962*102/02;
DET:CCUG<Classical phenotyping,Api Zym,Api Coryne,CFA(FAME)|C.Welinder-E.Kjellin<16S rRNA seq
CONDREM:Blood agar,CO2,37°C
NAMCH:Reported as 'May belong to a novel genus',formerly listed as Arthrobacter-Bogoriella
LIT:J Clin Microbiol 46:2980-2986,2008 [25195]
SUPPLY:DR

No matching names
Name literature references: none
Strain literature references:

ND: 25195
AU:Mages IS;Frodl R;Bernard KA;Funke G;
SO:J Clin Microbiol 46:2980-2986, 2008
TI:Identities of Arthrobacter spp. and Arthrobacter-like bacteria encountered in human clinical specimens
AB:Type strain of A.s. is CCUG 46407 Funke 741 = DSM 21259 Type strain of B.r. is Funke 20 = CCUG 56047 DSM 21258 http://jcm.asm.org/cgi/reprint/46/9/2980
TA:Arthrobacter sanguinis;Brevibacterium ravenspurgense;Pseudoclavibacter;


Phenotypic features in COX of CCUG 46407
Tests CAT51 241 52 431 1555 154
Api CORYNE152 415 555 141 111 111 115
Tests FERM111 111113 1 1111 0000000
Tests OLE1154 14 1114 541 153 555 541
Api ZYM14451 51151 53451 51551

Phenotypic features in STX of CCUG 46407
Api STAPH111 111 111 111 111 111 11
Api ID32S111 111 111 111 115 553 111 111 11
Api CORYNE152 415 555 141 111 111 115
Api ZYM14451 51151 53451 51551

16S rDNA sequence in SQX of CCUG 46407   FASTA
CCUG 46407
Taxon Arthrobacter-Bogoriella novel species
Seqsim 1 94% (443/470) sim with emb X93354 1 Arthrobacter cumminsii #445
Seqsim 2 94% (440/467) sim with emb Y09911 1 Bogoriella caseolytica T
Seqsim 3 93% (440/469) sim with gb AF501368 1 Kocuria kristinae
Litref 1 Hutson RA;Funke G;Collins MD,Reading,UK,
Litref 2 Groth I,Schumann P,....,Braunschweig,Germany,IJSB 47:788-794,1997
Litref 3 Jussila MM,...,Helsinki,Finland,HAMBI 2407
Taxrem 1 2) a new alkaliphilic actinomycete HKI0088T
Taxrem 2
Taxrem 3
Lab C.Welinder-E.Kjellin,DNA-lab,PHLS,Göteborg,Sweden
Date 20020522
Method FASTA;806R - Fredricks et al. 1998 [15999] 806R (reverse) [10015]
1- 50 TTGTNGGC.. ...CCCATGC TTTCGCTTCT CAGCGTCAGT AAATGCCCAG
51- 100 TAACCTGCCT TCGCCATCGG TGTTCTTCCT GATATCTGCG CATTCCACCG
101- 150 CTACACCAGG AATTCCAGTT ACCCCTACAT CACTCTAGCC TGCCCGTACC
151- 200 CACTGCAGAC CCGGAGTTAA GCCCCGGGCT TTCACAGCAG ACGCGACAAA
201- 250 CCGCCTACAA GCTCTTTACG CCCAATAATT CCGGATAACG CTCGCACCCT
251- 300 ACGTATTACC GCGGCTGCTG GCACGTAGTT AGCCGGTGCT TCTTCTGCCA
301- 350 GTACCCTCAC CCGAAGGCTT GTTCCTGACT GAAAGAGGTT TACAACCCGA
351- 400 AGGCCGTCAT CCCTCACGCG GCGTCGCTGC ATCAGGCTTT CGCCCATTGT
401- 450 TGCAATATTC CCACTGCTGC CTCCCGTAGG AGTCTGGGCC GTGTCTCAGT
451- 500 CCCAGTGTGA CCGGTCACCC TCTCAGGCCG .....TTNNC CNTCCAAGCC
501- 550 CTTCAGTANG CCTTNNCTNN ANTAATAAGN TNNTATNCNC GNNAGCNCNC
551- 600 NTTNGNNAAA CTCAANNATN NNTTTCCNCC CNNNNATCCT GCNNANGAAA
601- 650 NGNNTCANNT NNNNNGTNCT NCTNCNCCCT NCNNNCCTAT TCAGNANNCC
651- 700 NCTCTNNGNN CTCGCNNTNN NNCTCNNNAN TNNCTAATNN NTCTCTTCNT
701- 750 CGCATTTNGA TNCCANCCNC NTCANTCTTN NACCTTNCCN TNNNTCTNNN
751- 800 ANCNNTNNAC NCTTCTCCTN NNNTCANTTN NTNNCCTCCN NNCNTNTNCT
801- 850 NNNTNCCNTN NNGTTCANNT NCNNAGNGCT CNNCNTT


ND: 15999
AU:Fredricks DN;Relman DA;
SO:J Clin Microbiol 36:2810-2816, 1998
TI:Improved amplification of microbial DNA from blood cultures by removal of the PCR inhibitor sodium polyantholesulfonate
AB:806R - ggactaccagggtatctaat In use at the DNA-lab,Bakt.lab.SU,Gbg

ND: 10015
AU:Brosius et al. 1978
SO:PNAS 75 4801-4805 1978
TI:Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
AB:16S rRNA sequence nomenclature
TA:Escherichia coli;

16S rDNA sequence in SQX of CCUG 46407   FASTA
CCUG 46407
Taxon Arthrobacter sanguinis
Seqsim 1 100% (1452/1452) gb EU086805 GI:158905542 Arthrobacter sp. 741
Seqsim 2 94% (1379/1457) emb X93354 GI:1580727 Arthrobacter cumminsii
Seqsim 3 94% (1369/1447) emb Y11330 GI:2108304 Kocuria rosea
Litref 1 Mages IS;Frodl R;Bernard KA;Funke G;Ravensburg,Germany
Litref 2 Hutson RA;Funke G;Collins MD;Reading,UK
Litref 3 Rainey FA;Nobre MF;Schumann P;Stackebrandt E;da Costa MS;Baton Rouge
Taxrem 1 Funke 741 = CCUG 46407 - 08-AUG-2007 - JCM 46 2980-2986,2008 [25195]
Taxrem 2 DMMZ 445 = CCUG 36788 - 22-NOV-1995 - JCM 34 2356-2363,1996 [6681]
Taxrem 3 ATCC 187 = CCM 706 DSM 11630 - 18-FEB-1997 - IJSB 47,510 [6888]
Lab NCBI
Date 20081011
Method 16S rRNA
1- 50 gatgaaccgc tggcggcgtg cttaacacat gcaagtcgaa cgatgaagct
51- 100 ggaacttgtt ctggtggatt agtggcgaac gggtgagtaa cacgtgagca
101- 150 acctgcccaa gactttcggg ataagcctgg gaaactgggt ctaatactgg
151- 200 atatgacctt tcatcgcatg gtgtttggtg gaaagatttt ttggttttgg
201- 250 atgggctcgc ggcctatcag cttgttggtg aggtaatggc ttaccaaggc
251- 300 ttcgacgggt aaccggcctg agagggtgac cggtcacact gggactgaga
301- 350 cacggcccag actcctacgg gaggcagcag tggggaatat tgcacaatgg
351- 400 gcgaaagcct gatgcagcga cgccgcgtga gggatgacgg ccttcgggtt
401- 450 tgtaaacctc ttcagtcagg aacaagcctt cgggtgaggg tactggcaga
451- 500 agaagcaccg gctaactacg tgccagcagc cgcggtaata cgtagggtgc
501- 550 gagcgttatc cggaattatt gggcgtaaag agcttgtagg cggtttgtcg
551- 600 cgtctgctgt gaaagcccgg ggcttaactc cgggtctgca gtgggtacgg
601- 650 gcaggctaga gtgatgtagg ggtaactgga attcctggtg tagcggtgga
651- 700 atgcgcagat atcaggaaga acaccgatgg cgaaggcagg ttactgggca
701- 750 tttactgacg ctgagaagcg aaagcatggg gagcgaacag gattagatac
751- 800 cctggtagtc catgccgtaa acgttgggca ctaggtgtgg ggagcattcc
801- 850 acgttttccg cgccgtagct aacgcattaa gtgccccgcc tggggagtac
851- 900 ggccgcaagg ctaaaactca aaggaattga cgggggcccg cacaagcggc
901- 950 ggagcatgct gattaattcg atgcaacgcg aagaacctta ccaaggcttg
951- 1000 acatgaaccg gaccgccgca gagatgcggt ttcccttcgg ggctggttta
1001- 1050 caggtggtgc atggttgtcg tcagctcgtg tcgtgagatg ttgggttaag
1051- 1100 tcccgcaacg agcgcaaccc tcgttctatg ttgccagcac gtgatggtgg
1101- 1150 ggactcatag gagactgccg gggtcaactc ggaggaaggt ggggatgacg
1151- 1200 tcaaatcatc atgcccctta tgtcttgggc ttcaagcatg ctacaatggc
1201- 1250 cgatacaaag ggttgcgata ctgtgaggtg gagctaatcc caaaaagtcg
1251- 1300 gtctcagttc ggattggggt ctgcaactcg accccatgaa gtcggagtcg
1301- 1350 ctagtaatcg cagatcagca acgctgcggt gaatacgttc ccgggccttg
1351- 1400 tacacaccgc ccgtcaagtc acgaaagttg gtaacacccg aagccggtgg
1401- 1450 cctaacccct tgtgggaggg agccgtcgaa ggtgggactg gcgattggga
1451- 1500 ct


ND: 25195
AU:Mages IS;Frodl R;Bernard KA;Funke G;
SO:J Clin Microbiol 46:2980-2986, 2008
TI:Identities of Arthrobacter spp. and Arthrobacter-like bacteria encountered in human clinical specimens
AB:Type strain of A.s. is CCUG 46407 Funke 741 = DSM 21259 Type strain of B.r. is Funke 20 = CCUG 56047 DSM 21258 http://jcm.asm.org/cgi/reprint/46/9/2980
TA:Arthrobacter sanguinis;Brevibacterium ravenspurgense;Pseudoclavibacter;

ND: 6681
AU:Funke G;Hutson RA;Bernard KA;Pfyffer GE;Wauters G;Collins MD;
SO:J Clin Microbiol 34:2356-2363, 1996
TI:Isolation of Arthrobacter spp. from clinical specimens and description of Arthrobacter cumminsii sp.nov. and Arthrobacter woluwensis sp.nov.
TA:Arthrobacter cumminsii;Arthrobacter woluwensis;

ND: 6888
AU:Rainey FA;Nobre F;Schumann P;Stackebrandt E;Costa MS;
SO:Int J Syst Bacteriol 47: 510-514, 1997
TI:Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison.
TA:Deinococcus;Kocuria;

16S rDNA sequence in SQX of CCUG 46407   
CCUG 46407 b
Taxon Arthrobacter sanguinis
Seqsim 1 99% (466/468) gb EU086805 GI:158905542 Arthrobacter sp. 741
Seqsim 2 94% (442/468) gb DQ448703 GI:92091021 Ornithinimicrobium sp.
Seqsim 3 94% (443/470) gb AY382898 GI:37139714 Serinicoccus marinus
Litref 1 Mages IS;Frodl R;Bernard KA;Funke G;Ravensburg,Germany
Litref 2 Gontang EA;Fenical W;Jensen PR;La Jolla,CA,USA
Litref 3 Yi H;Schumann P;Sohn K;Chun J;Seoul,Korea
Taxrem 1 Funke 741 = CCUG 46407 - 08-AUG-2007 - JCM 46 2980-2986,2008 [25195]
Taxrem 2 CNJ824 PL04 - 15-MAR-2006 - AEM 73:3272-3282,2007 [24358]
Taxrem 3 JC1078 - 07-SEP-2003 - IJSEM 54 1585-1589,2004 [18342]
Lab C.Welinder-E.Kjellin,DNA-lab,PHLS,Göteborg,Sweden
Date 20081011
Method 16S rRNA 806R - Fredricks et al. 1998 [15999] 806R (reverse) [10015]
1- 50 CCCATGCTTT CGCTTCTCAG CGTCAGTAAA TGCCCAGTAA CCTGCCTTCG
51- 100 CCATCGGTGT TCTTCCTGAT ATCTGCGCAT TCCACCGCTA CACCAGGAAT
101- 150 TCCAGTTACC CCTACATCAC TCTAGCCTGC CCGTACCCAC TGCAGACCCG
151- 200 GAGTTAAGCC CCGGGCTTTC ACAGCAGACG CGACAAACCG CCTACAAGCT
201- 250 CTTTACGCCC AATAATTCCG GATAACGCTC GCACCCT
251- 300 ACGTATTACC GCGGCTGCTG GCACGTAGTT AGCCGGTGCT TCTTCTGCCA
301- 350 GTACCCTCAC CCGAAGGCTT GTTCCTGACT GAAAGAGGTT TACAACCCGA
351- 400 AGGCCGTCAT CCCTCACGCG GCGTCGCTGC ATCAGGCTTT CGCCCATTGT
401- 450 TGCAATATTC CCACTGCTGC CTCCCGTAGG AGTCTGGGCC GTGTCTCAGT
451- 500 CCCAGTGTGA CCGGTCACCC TCTCAGGCCG


ND: 25195
AU:Mages IS;Frodl R;Bernard KA;Funke G;
SO:J Clin Microbiol 46:2980-2986, 2008
TI:Identities of Arthrobacter spp. and Arthrobacter-like bacteria encountered in human clinical specimens
AB:Type strain of A.s. is CCUG 46407 Funke 741 = DSM 21259 Type strain of B.r. is Funke 20 = CCUG 56047 DSM 21258 http://jcm.asm.org/cgi/reprint/46/9/2980
TA:Arthrobacter sanguinis;Brevibacterium ravenspurgense;Pseudoclavibacter;

ND: 24358
AU:Gontang EA;Fenical W;Jensen PR;
SO:Appl Environ Microbiol 73:3272-3282, 2007
TI:Phylogenetic diversity of gram-positive bacteria cultured from marine sediments
TA:Exiguobacterium;

ND: 18342
AU:Yi H;Schumann P;Sohn K;Chun J;
SO:Int J Syst Evol Microbiol 54:1585-1589, 2004
TI:Serinicoccus marinus gen. nov., sp. nov., a novel actinomycete with L-ornithine and L-serine in the peptidoglycan
AB: Publ. 5 Mar 2004:http://www.sgm.ac.uk/IJSEM/PiP/ijsem03036.pdf http://ijs.sgmjournals.org/cgi/reprint/54/5/1585.pdf
TA:Serinicoccus marinus;

ND: 15999
AU:Fredricks DN;Relman DA;
SO:J Clin Microbiol 36:2810-2816, 1998
TI:Improved amplification of microbial DNA from blood cultures by removal of the PCR inhibitor sodium polyantholesulfonate
AB:806R - ggactaccagggtatctaat In use at the DNA-lab,Bakt.lab.SU,Gbg

ND: 10015
AU:Brosius et al. 1978
SO:PNAS 75 4801-4805 1978
TI:Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
AB:16S rRNA sequence nomenclature
TA:Escherichia coli;

CCUG - Fatty Acid profile - CFA(FAME)  
-------------------------------------------------------------------------------------------------------------------
Strain : CCUG 46407 T Taxon : Arthrobacter sanguinis
Date:051005
Remarks:Blood agar,CO2,37°C
-------------------------------------------------------------------------------------------------------------------
PEAK RT   ECL     %   Abbreviation Fatty Acid
038 6.826   13.618   1.9   14:0 ISO
059 8.316   14.621   22.1   15:0 ISO
060 8.455   14.711   28.5   15:0 ANTEISO
067 8.903   15.000   0.7   15:0
077 9.953   15.626   10.6   16:0 ISO
086 10.580   16.000   1.0   16:0
101 11.673   16.629   7.2   17:0 ISO
102 11.834   16.722   26.3   17:0 ANTEISO
125 13.596   17.724   0.4   18:2 w6,9c/18:0 ANTE
131 14.083   18.000   0.2   18:0
UD1     14.924   0.4   Unidentified Data useless for calculation
UD2     17.027   0.4   Unidentified Data useless for calculation
UD3     19.068   0.2   Unidentified Data useless for calculation
-------------------------------------------------------------------------------------------------------------------
Sum:         100  
-------------------------------------------------------------------------------------------------------------------
 
CCUG - Fatty Acid profile - CFA(FAME)  
-------------------------------------------------------------------------------------------------------------------
Strain : CCUG 46407 Tb Taxon : Arthrobacter sanguinis
Date:020503
Remarks:Blood agar,30°
-------------------------------------------------------------------------------------------------------------------
PEAK RT   ECL     %   Abbreviation Fatty Acid
038 6.826   13.618   6.2   14:0 ISO
059 8.316   14.621   20.8   15:0 ISO
060 8.455   14.711   27.9   15:0 ANTEISO
077 9.953   15.626   17.8   16:0 ISO
086 10.580   16.000   0.9   16:0
101 11.673   16.629   4.5   17:0 ISO
102 11.834   16.722   21.2   17:0 ANTEISO
125 13.596   17.724   0.7   18:2 w6,9c/18:0 ANTE
-------------------------------------------------------------------------------------------------------------------
Sum:         100  
-------------------------------------------------------------------------------------------------------------------
 
CCUG, Department of Clinical Bacteriology
Curator: Prof. Dr. E.R.B. Moore
University of Göteborg, Mikrobiologen,
Guldhedsgatan 10, SE-413 46 Göteborg
Box 7193, SE-402 34 Göteborg, Sweden
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